Welcome to the CHO - EPIGENOME DATABASE

Downloads:

Download Annotation
Annotation File
APMK01000000 annotation.gff
Download BAM files
Cell Line BAM BAM Index
K1-FCS Normalised K1 FCS Normalised K1 FCS index
K1-8mM-Gln-MCB coverage Normalised K1-8mM-Gln-MCB for coverage Normalised K1-8mM-Gln-MCB for coverage index
K1-8mM-Gln-MCB readnumber Normalised K1-8mM-Gln-MCB for read number Normalised K1-8mM-Gln-MCB for read number index
K1-8mM-Gln-6-mths K1 8mM Gln 6mths K1 8mM Gln 6mths index
K1-no-Gln Normalised K1 no Gln Normalised K1 no Gln
K1/1D9-MCB Normalised K1/1D9 MCB Normalised K1/1D9 MCB
K1/1D9-3mths Normalised K1/1D9 3mths Normalised K1/1D9 3mths
Download SNP files
Cell Line File
K1-FCS K1_FCS_SNP.vcf.gz
K1-8mM-Gln-MCB K1_8mM_Gln_MCB_SNP.vcf.gz
K1-8mM-Gln-6-mths K1_8mM_Gln_6mths_SNP.vcf.gz
K1-no-Gln K1_no_Gln_SNP.vcf.gz
K1/1D9-MCB K1_1D9_SNP.vcf.gz
K1/1D9-3mths K1_1D9_3mths_SNP.vcf.gz
Download Structural variant files
Cell Line File
K1-FCS K1_FCS_SV.vcf.gz
K1-8mM-Gln-MCB K1_8mM_Gln_MCB_SV.vcf.gz
K1-8mM-Gln-6-mths K1_8mM_Gln_6mths_SV.vcf.gz
K1-no-Gln K1_no_Gln_SV.vcf.gz
K1/1D9-MCB K1_1D9_SV.vcf.gz
K1/1D9-3mths K1_1D9_3mths_SV.vcf.gz
Download Methylome Bismark files
Cell Line OT OB
K1-FCS K1_FCS_CpG_OT_bismark.cov.gz K1_FCS_CpG_OB_bismark.cov.gz
K1-8mM-Gln-MCB-exp K1_8mM_Gln_MCB_exp_OT_bismark.cov.gz K1_8mM_Gln_MCB_exp_OB_bismark.cov.gz
K1-8mM-Gln-MCB-sta K1_8mM_Gln_MCB_OT_sta_bismark.cov.gz K1_8mM_Gln_MCB_OB_sta_bismark.cov.gz
K1-8mM-Gln-6-mths K1_8mM_Gln_6mths_OT_bismark.cov.gz K1_8mM_Gln_6mths_OB_bismark.cov.gz
K1-no-Gln K1_no_Gln_OT_bismark.cov.gz K1_no_Gln_OB_bismark.cov.gz
K1/1D9-MCB K1_1D9_OT_bismark.cov.gz K1_1D9_OB_bismark.cov.gz
K1/1D9-3mths K1_1D9_3mths_OT_bismark.cov.gz K1_1D9_3mths_OB_bismark.cov.gz
Download ChIP-Seq files
Timepoint Antibody File Name
Tp0H3K27acBSF_0154_C6RLRANXX_4_A5_libraries20_33_H3K27ac_Tp0.bam
Tp0H3K27me3BSF_0133_C5GW4ACXX_4_LibraryE2_1_H3K27me3_Tp0.bam
Tp0H3K36me3BSF_0133_C5GW4ACXX_4_LibraryE2_17_H3K36me3_Tp0.bam
TP0H3K4me1BSF_0154_C6RLRANXX_4_A6_libraries20_41_H3K4me1_TP0.bam
Tp0H3K4me3BSF_0154_C6RLRANXX_7_A4_libraries20_25_H3K4me3_Tp0.bam
Tp0H3K9me3BSF_0133_C5GW4ACXX_4_LibraryE2_9_H3K9me3_Tp0.bam
Tp10H3K27acBSF_0155_C6RAWANXX_1_E5_libraries20_37_H3K27ac_Tp10.bam
Tp10H3K4me1BSF_0155_C6RAWANXX_1_E6_libraries20_45_H3K4me1_Tp10.bam
Tp10H3K4me3BSF_0155_C6RAWANXX_4_E4_libraries20_29_H3K4me3_Tp10.bam
Tp10H3K9me3BSF_0154_C6RLRANXX_7_E2_libraries20_13_H3K9me3_Tp10.bam
Tp11H3K27acBSF_0155_C6RAWANXX_5_E11_libraries20_82_H3K27ac_Tp11.bam
Tp11H3K27me3BSF_0155_C6RAWANXX_3_E7_libraries20_53_H3K27me3_Tp11.bam
Tp11H3K36me3BSF_0155_C6RAWANXX_3_E9_libraries20_68_H3K36me3_Tp11.bam
Tp11H3K4me1BSF_0155_C6RAWANXX_8_H5_libraries20_40_H3K4me1_Tp11.bam
Tp11H3K4me3BSF_0155_C6RAWANXX_3_E10_libraries20_75_H3K4me3_Tp11.bam
Tp11H3K9me3BSF_0155_C6RAWANXX_4_E8_libraries20_61_H3K9me3_Tp11.bam
Tp12H3K27acBSF_0155_C6RAWANXX_8_F5_libraries20_38_H3K27ac_Tp12.bam
Tp12H3K27me3BSF_0133_C5GW4ACXX_3_LibraryE2_6_H3K27me3_Tp12.bam
Tp12H3K36me3BSF_0154_C6RLRANXX_4_F3_libraries20_22_H3K36me3_Tp12.bam
Tp12H3K4me1BSF_0155_C6RAWANXX_8_F6_libraries20_46_H3K4me1_Tp12.bam
Tp12H3K4me3BSF_0155_C6RAWANXX_1_F4_libraries20_30_H3K4me3_Tp12.bam
Tp12H3K9me3BSF_0133_C5GW4ACXX_3_LibraryE2_14_H3K9me3_Tp12.bam
Tp13ControlBSF_0128_C5HP5ACXX_5_Library_E_1_18_Input_13_Tp13.bam
Tp13H3K27acBSF_0128_C5HP5ACXX_5_Library_E_1_20_H3K27ac_Tp13.bam
Tp13H3K27me3BSF_0128_C5HP5ACXX_6_Library_E_1_15_H3K27me3_Tp13.bam
Tp13H3K36me3BSF_0128_C5HP5ACXX_5_Library_E_1_17_H3K36me3_Tp13.bam
Tp13H3K4me1BSF_0128_C5HP5ACXX_6_Library_E_1_21_H3K4me1_Tp13.bam
Tp13H3K4me3BSF_0127_C5CJ1ACXX_5_Library_E_1_19_H3K4me3_Tp13.bam
Tp13H3K9me3BSF_0128_C5HP5ACXX_6_Library_E_1_16_H3K9me3_Tp13.bam
Tp14H3K27acBSF_0155_C6RAWANXX_6_F11_libraries20_83_H3K27ac_Tp14.bam
Tp14H3K27me3BSF_0155_C6RAWANXX_8_F7_libraries20_54_H3K27me3_Tp14.bam
Tp14H3K4me1BSF_0155_C6RAWANXX_5_H6_libraries20_48_H3K4me1_Tp14.bam
Tp14H3K4me3BSF_0154_C6RLRANXX_7_F10_libraries20_76_H3K4me3_Tp14.bam
Tp14H3K9me3BSF_0155_C6RAWANXX_7_F8_libraries20_62_H3K9me3_Tp14.bam
Tp15H3K27acBSF_0155_C6RAWANXX_3_G5_libraries20_39_H3K27ac_Tp15.bam
Tp15H3K27me3BSF_0155_C6RAWANXX_2_G1_libraries20_7_H3K27me3_Tp15.bam
Tp15H3K36me3BSF_0155_C6RAWANXX_2_G3_libraries20_23_H3K36me3_Tp15.bam
Tp15H3K4me1BSF_0155_C6RAWANXX_3_G6_libraries20_47_H3K4me1_Tp15.bam
Tp15H3K4me3BSF_0155_C6RAWANXX_6_G4_libraries20_31_H3K4me3_Tp15.bam
Tp15H3K9me3BSF_0155_C6RAWANXX_2_G2_libraries20_15_H3K9me3_Tp15.bam
Tp16H3K27acBSF_0155_C6RAWANXX_7_G11_libraries20_84_H3K27ac_Tp16.bam
Tp16H3K27me3BSF_0155_C6RAWANXX_5_G7_libraries20_55_H3K27me3_Tp16.bam
Tp16H3K36me3BSF_0155_C6RAWANXX_7_G9_libraries20_70_H3K36me3_Tp16.bam
Tp16H3K4me1BSF_0154_C6RLRANXX_4_H7_libraries20_56_H3K4me1_Tp16.bam
Tp16H3K4me3BSF_0155_C6RAWANXX_7_G10_libraries20_77_H3K4me3_Tp16.bam
Tp16H3K9me3BSF_0155_C6RAWANXX_6_G8_libraries20_63_H3K9me3_Tp16.bam
Tp17ControlBSF_0128_C5HP5ACXX_6_Library_E_1_25_Input_17_Tp17.bam
Tp17H3K27acBSF_0128_C5HP5ACXX_7_Library_E_1_27_H3K27ac_Tp17.bam
Tp17H3K27me3BSF_0127_C5CJ1ACXX_5_Library_E_1_22_H3K27me3_Tp17.bam
Tp17H3K36me3BSF_0128_C5HP5ACXX_6_Library_E_1_24_H3K36me3_Tp17.bam
Tp17H3K4me1BSF_0128_C5HP5ACXX_7_Library_E_1_28_H3K4me1_Tp17.bam
Tp17H3K4me3BSF_0128_C5HP5ACXX_6_Library_E_1_26_H3K4me3_Tp17.bam
Tp17H3K9me3BSF_0127_C5CJ1ACXX_5_Library_E_1_23_H3K9me3_Tp17.bam
Tp1H3K27acBSF_0154_C6RLRANXX_4_A11_libraries20_78_H3K27ac_Tp1.bam
Tp1H3K27me3BSF_0154_C6RLRANXX_6_A7_libraries20_49_H3K27me3_Tp1.bam
Tp1H3K36me3BSF_0155_C6RAWANXX_6_A9_libraries20_64_H3K36me3_Tp1.bam
Tp1H3K4me1BSF_0133_C5GW4ACXX_4_LibraryE2_8_H3K4me1_Tp1.bam
Tp1H3K4me3BSF_0133_C5GW4ACXX_3_LibraryE2_71_H3K4me3_Tp1.bam
Tp1H3K9me3BSF_0155_C6RAWANXX_7_A8_libraries20_57_H3K9me3_Tp1.bam
Tp2H3K27acBSF_0155_C6RAWANXX_4_B5_libraries20_34_H3K27ac_Tp2.bam
Tp2H3K36me3BSF_0155_C6RAWANXX_2_B3_libraries20_18_H3K36me3_Tp2.bam
Tp2H3K4me1BSF_0155_C6RAWANXX_4_B6_libraries20_42_H3K4me1_Tp2.bam
Tp2H3K4me3BSF_0154_C6RLRANXX_4_B4_libraries20_26_H3K4me3_Tp2.bam
Tp2H3K9me3BSF_0133_C5GW4ACXX_4_LibraryE2_10_H3K9me3_Tp2.bam
Tp3H3K27acBSF_0155_C6RAWANXX_7_B11_libraries20_79_H3K27ac_Tp3.bam
Tp3H3K27me3BSF_0155_C6RAWANXX_4_B7_libraries20_50_H3K27me3_Tp3.bam
Tp3H3K36me3BSF_0155_C6RAWANXX_5_B9_libraries20_65_H3K36me3_Tp3.bam
Tp3H3K4me1BSF_0133_C5GW4ACXX_3_LibraryE2_16_H3K4me1_Tp3.bam
Tp3H3K4me3BSF_0155_C6RAWANXX_5_B10_libraries20_72_H3K4me3_Tp3.bam
Tp3H3K9me3BSF_0155_C6RAWANXX_1_B8_libraries20_58_H3K9me3_Tp3.bam
Tp4H3K27acBSF_0154_C6RLRANXX_6_C5_libraries20_35_H3K27ac_Tp4.bam
Tp4H3K27me3BSF_0154_C6RLRANXX_5_C1_libraries20_3_H3K27me3_Tp4.bam
Tp4H3K36me3BSF_0154_C6RLRANXX_5_C3_libraries20_19_H3K36me3_Tp4.bam
Tp4H3K4me1BSF_0154_C6RLRANXX_6_C6_libraries20_43_H3K4me1_Tp4.bam
Tp4H3K4me3BSF_0155_C6RAWANXX_2_C4_libraries20_27_H3K4me3_Tp4.bam
Tp4H3K9me3BSF_0154_C6RLRANXX_5_C2_libraries20_11_H3K9me3_Tp4.bam
Tp5ControlBSF_0116_C55NLACXX_2_Library_E_1_4_Input_5_Tp5.bam
Tp5H3K27acBSF_0116_C55NLACXX_2_Library_E_1_6_H3K27ac_Tp5.bam
Tp5H3K27me3BSF_0128_C5HP5ACXX_7_Library_E_1_1_H3K27me3_Tp5.bam
Tp5H3K36me3BSF_0116_C55NLACXX_2_Library_E_1_3_H3K36me3_Tp5.bam
Tp5H3K4me1BSF_0116_C55NLACXX_2_Library_E_1_7_H3K4me1_Tp5.bam
Tp5H3K4me3BSF_0128_C5HP5ACXX_7_Library_E_1_5_H3K4me3_Tp5.bam
Tp5H3K9me3BSF_0128_C5HP5ACXX_7_Library_E_1_2_H3K9me3_Tp5.bam
Tp6H3K27acBSF_0155_C6RAWANXX_1_C11_libraries20_80_H3K27ac_Tp6.bam
Tp6H3K27me3BSF_0155_C6RAWANXX_1_C7_libraries20_51_H3K27me3_Tp6.bam
Tp6H3K36me3BSF_0154_C6RLRANXX_6_C9_libraries20_66_H3K36me3_Tp6.bam
Tp6H3K4me1BSF_0154_C6RLRANXX_5_H3_libraries20_24_H3K4me1_Tp6.bam
Tp6H3K4me3BSF_0154_C6RLRANXX_6_C10_libraries20_73_H3K4me3_Tp6.bam
Tp6H3K9me3BSF_0155_C6RAWANXX_2_C8_libraries20_59_H3K9me3_Tp6.bam
Tp7H3K27acBSF_0133_C5GW4ACXX_3_LibraryE2_36_H3K27ac_Tp7.bam
Tp7H3K27me3BSF_0154_C6RLRANXX_5_D1_libraries20_4_H3K27me3_Tp7.bam
Tp7H3K36me3BSF_0133_C5GW4ACXX_3_LibraryE2_20_H3K36me3_Tp7.bam
Tp7H3K9me3BSF_0154_C6RLRANXX_5_D2_libraries20_12_H3K9me3_Tp7.bam
Tp8H3K27acBSF_0155_C6RAWANXX_4_D11_libraries20_81_H3K27ac_Tp8.bam
Tp8H3K27me3BSF_0155_C6RAWANXX_6_D7_libraries20_52_H3K27me3_Tp8.bam
Tp8H3K36me3BSF_0155_C6RAWANXX_8_D9_libraries20_67_H3K36me3_Tp8.bam
Tp8H3K4me1BSF_0155_C6RAWANXX_3_H4_libraries20_32_H3K4me1_Tp8.bam
Tp8H3K4me3BSF_0155_C6RAWANXX_8_D10_libraries20_74_H3K4me3_Tp8.bam
Tp8H3K9me3BSF_0155_C6RAWANXX_5_D8_libraries20_60_H3K9me3_Tp8.bam
Tp9ControlBSF_0116_C55NLACXX_2_Library_E_1_11_Input_9_Tp9.bam
Tp9H3K27acBSF_0128_C5HP5ACXX_5_Library_E_1_13_H3K27ac_Tp9.bam
Tp9H3K27me3BSF_0127_C5CJ1ACXX_5_Library_E_1_8_H3K27me3_Tp9.bam
Tp9H3K36me3BSF_0128_C5HP5ACXX_5_Library_E_1_10_H3K36me3_Tp9.bam
Tp9H3K4me1BSF_0128_C5HP5ACXX_5_Library_E_1_14_H3K4me1_Tp9.bam
Tp9H3K4me3BSF_0116_C55NLACXX_2_Library_E_1_12_H3K4me3_Tp9.bam
Tp9H3K9me3BSF_0128_C5HP5ACXX_7_Library_E_1_9_H3K9me3_Tp9.bam